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In this anticline, secondary structures are found.
Any predicted secondary structures were eliminated by codon replacements.
Hairpin RNA secondary structures were also predicted.
RNA secondary structures were predicted using RNAfold.
This applies to all the three secondary structures.
We then analyzed secondary structures of α1 domains.
The predicted secondary structures are shown in Figure S5.
Secondary structures were assigned by the DSSP program [50].
Secondary structures were predicted with JPred (www.compbio.dundee.ac.uk/∼www-jpred/) [54].
Alignments were manually refined using phylogenetically conserved secondary structures.
The characteristic secondary structures are depicted in Fig. 1E.
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