Sentence examples for secondary notation from inspiring English sources

The use of secondary notation and the matc mismatch hypothesis is reconsidered in the light of functional programming.

In process models, secondary notation elements such as colors, however, provides designers with visual cues to potentially increase the efficiency and effectiveness without changing the semantics of the model itself.

Multiple sequence alignment of all 3 clusters together with the secondary structure notation derived from experimentally derived structures and catalytic residue information is shown in supplementary figure S2 (Supplementary Material online).

The aligned DNA sequences for each of the four altered repeats are shown alongside the secondary structure notations.

Secondary structure notations masks: brackets "", "", and "< >" indicate paired sites; dots "." indicate unpaired sites, and asterisks "*" indicate regions of ambiguous alignment (RAAs).

In addition to uniquely determining a pseudoknot-free secondary structure, this notation has the advantage of providing a compact annotation of the sequence or alignment to which the structure refers.

The notation used for secondary structure was taken from Kamata et al. [7].

The notation for the secondary structural elements of the CaMKII hub domain are shown.

For the color coding, we added insets and more explanation in Fig. 2. 3. It would also be nice with a short explanation of what "secondary structure in Shapiro's notation" means.

The other is a string of balanced parentheses over the character set, known as "dot-bracket" notation, describing the secondary structure of the RNA sequence (dot means no base-pairing, and each open and close parentheses represent a base pairing).

In our implementation of the algorithm, the inputs to the program are a pseudoknot-free RNA secondary structure in dot-bracket notation (Vienna format) and the locations of two bases for which the distance needs to be calculated.