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The second most abundant type of substitutions were in the 3' regions of D loop (Table 2, Fig. 2).
Indels are the second most abundant type of genetic variation, following single nucleotide substitutions and account for almost a quarter of the genetic variation implicated in disease [ 20].
The second most abundant type of conserved avoided codon pair was nnGnnC (type 2A), which was more strongly avoided in ORFeomes than in genomes.
Category 2 is the most abundant type of SNPs and constitutes 60% of all candidate SNPs; Category 1 is the second most abundant type with 21% of all candidate SNPs.
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The fourth most abundant type of substitutions was found in the 5' part of the D stem, where A substituted for C (Table 2).
The fifth most abundant type of substitutions involved the well-known A to I editing in the anticodon loop (Table 1, ref. [ 7]).
The third most abundant type of substitutions occurred between the D loop and acceptor stem, at the position of N2-methylguanosine (mG) [ 5, 6].
The second most-abundant type of polymorphism detected was in 3'UTRs.
The second-most abundant type is the 'pale' (p) ommatidia, which account for approximately 30 to 40% of all ommatidia, and express the UV-sensitive Rhodopsin 3 (Rh3) in R7 and the blue-sensitive Rhodopsin 5 (Rh5) in R8, enabling these ommatidia to discriminate among short wavelengths of light [ 15].
The second most abundant sequence type, in all except the deep samples from the mat edge, are in the Deep Sea Hydrothermal Vent Euryarchaeota Group 8 (DHVE8) [55] within the DHVE II [56].
It was worth mentioning that LVPs were the second most abundant toxin type in the venom of Yunnan-sourced population.
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