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Starting with the second generation of selection, there was a constant difference in mean number of FP bouts between both lines.
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Realized heritability in the first and second generations of selection yielded estimates ofh2 =0.41 and h2=0.53, respectively.
An important investment has been done on genomic research in this species for boosting breeding programs, currently in their fifth generation of selection.
After the first generation of selection, an important reduction was seen in genetic variance for all selection methods (Table 6).
However, mate selection can improve the expected genetic response over random mating only in the first generation of selection.
Indeed, Figure 3E shows a slight increase in the mean QTL-marker LD after the first generation of selection.
The response to the first generation of selection was similar for the three genomic evaluation methods when compared within a specific genetic architecture (Table 3).
The shallow reference population structure resulted in higher accuracies (0.63 ± 0.03) in the first generation of selection candidates compared to the deep reference population (0.55 ± 0.03).
In the first generation of selection we randomly assigned one sixth of all males to the PR line, one sixth to the CO line, and one third to each of the AT and UN lines.
After the initial drop of genetic variance in the first generation of selection, a small rebound in genetic variance was seen in some scenarios before variance started to decrease again.
Average and standard deviation (SD) (generation 1003, one replicate) The results of the first generation of selection are presented in Table 2 for all the studied situations: MS (mass selection), GSA (genomic selection without dominance), GSD (genomic selection with dominance), and GSD + MA (genomic selection with dominance and mate allocation).
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