Parsimony analysis was performed by an exhaustive search implemented by the PAUP software package version 4.0b10 [ 102].
In the tabular view, users can refine a search by clicking on any column header in the data table, moving the mouse to the empty field next to 'Filters' in the drop-down menu, and typing in the search term as shown in Fig. 5. mycoCLAP provides a full-text search implemented by Lucene indexing search engine (http://lucene.apache.org/).org/
Overall, global searching is performed by EB and local searching is implemented by OB.
The search engine uses text from the KEGG-database, PubMed and other sources to establish links between query words to access protein data using an intelligent Google-like search engine implemented by the search platform Lucene/Solr [ 52].
The main core of the NDM search strategy implemented by CDMS is, by design, random tree searching.
A comprehensive search strategy implemented by a research librarian was done in April 2012 in the following electronic databases: MEDLINE®, PubMed, Embase, International Pharmaceutical Abstracts, CINAHL, and Web of Science® and reference lists of included articles were also manually searched.
As in the previous table, the proposed algorithm is tested against the two above-mentioned search algorithms implemented by the JM reference encoder.
As in the previous table, the proposed algorithm is tested against the two above-mentioned search algorithms implemented by the JM reference encoder, and therefore the results are divided depending on the reference algorithm used.
Moreover, the proposed algorithm is tested against two search algorithms implemented by the JM reference encoder, and therefore the results are further divided depending on the reference algorithm used.
Furthermore, hmm search as implemented by pfam_search.pl against the Pfam database (Punta et al. 2012) was used for domain identification.
