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Although the ORF is annotated only in few genomes, it was found by tBLASTn searches at the same locus in all H. pylori strains as well as in H. cetorum and H. acinonychis.
Another approach has been to break the genes into modules and perform module assignments and motif searches at the same time via an expectation maximization algorithm (as opposed to clustering first and finding motifs later) [ 21, 22].
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We focus on the scenario where two users are searching at the same time on the same task, and via an interface, can see the activity of the other user.
And then the last search direction replaces one time of the previous n times in a search, at the same time, algorithm starts the next iteration, until the function value is no longer reduced.
Other scientists discover and delve into new disciplines while trying to solve the classic "two-body problem," in which two academics who have a personal relationship must job search at the same time.
By contrast, the proposed algorithm does not experience that compression efficiency-complexity trade-off because all PUs are searched at the same time in their summed paths, which enlarges the search point sets for each individual PU, keeping the search point set same for the whole CU.
Multiple genes could be searched at the same time.
HB3 homologs for var2csa were identified by BLASTN search at the same website, using the 3D7 allele.
TREE-PUZZLE implements quartet puzzling (QP) tree search; at the same time, the algorithm estimates support values for each internal branch.
Intriguingly, if the number of total items remains constant and the ratio of attended to unattended items is varied, search times increase with the number of attended items to be searched at the same rate for both adults and children.
To estimate false-positive discovery rates (FDR), each sequence was randomized (keeping amino acid composition and length the same) and the resulting "shuffled" sequences were added to the "normal" database (doubling its size) and searched at the same time.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com