Sentence examples for search upstream from inspiring English sources

On the other hand, the search upstream of upregulated transcripts revealed several possible motifs.

Users can search upstream, downstream, or in both directions.

For motif search upstream regions of transcribed loci were extracted −60 to 40 basepairs relative to the start position.

To date non-homology based operon prediction methods that search upstream regions for motifs have only included promoters and/or terminators [ 9- 17, 17].

Each PSPM was developed from matches within 200 nt of the translation start site, and then used to search upstream of each gene's start codon using the FIMO program [ 20].

The preliminary motif definitions from the High Confidence and Expanded sets were used to search upstream of all 17,797 P. infestans genes, and the resulting matches were used to establish position-specific probability matrices (PSPMs; provided in Additional file 1).

If those two entities did not specify specific permissions for the target statement, then those are searched upstream (Figure 4) until reaching the Project or even Deployment level.

Given an anchor gene, SynFind searches upstream and downstream half a window size from the query.

We searched upstream of the major Geobacter che operons and fliC loci for evidence of σ-regulated expression.

Furthermore, to obtain additional evidence for encoded proteins within the new intergenic transcripts, a RBS was searched upstream of the longest predicted open reading frame.

To investigate if the genes encoding these up-regulated proteins are potential transcription targets of Yap1p, we have searched upstream of each nucleotide sequence for the predicted Yap1p-binding sites [ 14- 16].