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Exact(47)
position, position-if, and position-if-not each search sequence for an element that satisfies the test.
Users could click each of the buttons as many times as they like, creating a search sequence.
· The dictionary can be queried by typing the search sequence in the input textbox, selecting the Input Type (either English or Chinese ping ying) and clicking Go!
HIF-1α and HIF-2α sequences from mouse (M. musculus), flamingo (P. ruber ruber), frog (X. tropicalis), zebra fish (D. rerio), epaulette shark (H. ocellatum), fly (D. melanogaster), worm (C. elegans), and anemone (E. pallida) were identified with the protein BLAST algorithm using human HIF-1α (GI:4504385) and HIF-2α (GI:1805268) as the search sequence.
Hidden Markov models built from the resulting sequence sets were used to search sequence databases.
MAST avoids allowing gaps in the profiles or in the search sequence.
Similar(13)
User can search sequences of pineapple including genomic scaffolds, coding sequences, or proteins.
An online tool (Virulence Searcher) has been designed that enables scientists interested in bacterial pathogenesis to search sequences from unannotated bacterial genomes for putative genes encoding virulence factors.
All search sequences were 400 nt long and extracted around the peak centre positions.
Users can also search sequence-specific DNA binding TFs to see which tissue or cell types the TFs may be active and with which cofactors they may work in these tissues or cell types.
For both databases, we used the D. melanogaster protein sequence as search sequences.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com