Sentence examples for search replicate from inspiring English sources

One thousand nonparametric bootstrap replicates were performed in RAxML using the same partitions and models of sequence evolution with one search replicate per bootstrap replicate and a random starting tree; branch lengths and model parameters were optimized during the bootstrap analysis.

The parameter estimates from the search replicate that obtained the tree with the highest log-likelihood value were fixed in a 200-replicate ML bootstrap analysis [ 57] using default settings.

100 ML search replicates were run for each dataset.

Maximum parsimony(MP) analyses were conducted using PAUP version 4.0b10 [29] on G5 Macintosh computers by heuristic search and tree bisection reconnection (TBR) branch swapping with 1000 search replicates, each replicate with random sequence addition.

ML combined analyses (e.g. different gene datasets concatenated) were executed through the metapopulation genetic algorithm implemented in MetaPIGA version 2.0 [82] using a mixed-model approach with each search replicated 10,000 times.

We generated new, fully dichotomized trees by running 500 random addition heuristic search replicates in PAUP* as described above, saving the 10 shortest trees from each for TBR swapping to a final limit of 1000.

Three search replicates were performed.

Bootstrap confidence intervals were calculated from 100 heuristic search replicates.

Bootstrap confidence intervals were calculated by 500 heuristic search replicates.

Twenty-five seareplicatesates were performed to find the best tree.

An update search, replicating the original search, was performed in March 2011.