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Therefore, to search for termination sites, we analysed ∼100 kb regions centred on the fork fusion zones between adjacent origins (oriC1/oriC2, oriC2/oriC3 and oriC3/oriC1).
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The STIRRUPS Classifier employs USEARCH [ 23] to align sequence reads to the reference library with the parameters for search termination and word count rejection disabled.
For termination sites, TransTerm searches for rho-independent transcription terminators to assign the correct termination site [ 6].
Some other restrictions are only applicable for motif filtering, but not for termination of the search branches.
The seismic stratigraphic interpretation method depends upon the observation of all the seismic parameters (continuity, amplitude, apparent frequency, configuration, reflection terminations, search for unconformities, and their classification within uniform units to define seismic "facies" and then on the 3D analysis of their lateral and vertical variations) (Ravenne 2002).
The full-text search for DMC, interim and early termination terms identified a total of 6,823 potentially relevant records, which were screened for inclusion criteria.
In [4], a constant threshold was used for early search termination.
Therefore, this paper proposes the new early search termination for fast motion estimation by extending our previous work to a two-dimensional space.
Using a heavily constrained biophysical model of a L5 PFC microcircuit we investigate the mechanisms that underlie persistent activity emergence (ON) and termination (OFF) and search for the minimum network size required for expressing these states within physiological regimes.
The TransTerm software [ 43] was used to search for Rho-independent signals for transcription termination.
Default settings were used for Garli analyses, except that the number of generations required for termination (genthreshfortopoterm) was increased to 40,000 to improve the search.
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