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The use of the same ontologies to annotate metadata in both databases allows for the community to search for experiments performed on the same or similar biological samples.
The annotation of datasets using a common set of ontologies, coupled with search interfaces that allow programmatic integration of datasets from different resources, will facilitate the community's ability to search for experiments without integrating the data into a single centralized database.
Integration and analysis of omics data from BESC, GEO and ArrayExpress: the BESC Knowledgebase provides tools that allow the user to search for experiments in external resources such as NCBI GEO (Boyle, 2005) using keywords, bring them into the local analysis environment and integrate datasets with genomic data in the BESC Knowledgebase.
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We searched for experiments preferentially dealing with human cells, but some mutations were found only in mice.
In summary, storing new data and searching for experiments in the literature containing given characteristics (such as a specific manipulation or regenerated morphology), can be done effortlessly with the help of the software tool Planform and the database of regenerative experiments.
While keeping the core parameters at default values, we manually searched for experiment specific parameter values that minimized the distance between the simulation output and the reported results of the focal lab-experiment.
Motivation: As ArrayExpress and other repositories of genome-wide experiments are reaching a mature size, it is becoming more meaningful to search for related experiments, given a particular study.
Annotating these metadata with ontologies provides alternate ways to search for these experiments (discussed below and Figure 1 ).
Thus, we used the Gene Chaser tool[ 54] to search for microarray experiments where all three human P-DUDES genes would show similar expression changes.
Human beings are going to continue to search for and experiment with chemical ways of getting high.
This is particularly useful when searching for similar experiments.
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