Sentence examples for search alignment from inspiring English sources

An iterative procedure of HMMER search, alignment, manual inspection, and editing allowed us to construct full gene alignments, with annotated intron boundaries and BPs.

Partial sequences from clones and bacterial isolates were compared against the National Center for Biotechnology Information (NCBI) genomic database with the BLAST (http://blast.ncbi.nlm.nih.gov/Blast.cgi) search alignment tool.

Based on the BLOSUM62 matrix used for scoring BLAST search alignments, the V→I change is a conserved amino acid change.

Homology search alignments were managed within the AlignStoreDB relational database.

The resulting repository contains GO term predictions for over 13.2 million non-redundant protein sequences based on BLAST search alignments from the SIMAP database.

It currently offers 34 interconnected external and in-house tools, whose functionality covers sequence similarity searching, alignment construction, detection of sequence features, structure prediction, and sequence classification.

Small molecule bioactivities mapped to protein domains add important precision to approaches that use protein sequence searches alignments to assist applications in computational drug discovery and systems and chemical biology.

Primer information is listed in Additional file 2. Database searches, alignments and sequence analyses were performed with the aid of the ANGIS [ 66], NCBI [ 67] and IBISS [ 68, 69].

The mechanism of homology search and alignment remain elusive.

A broad range of similarity search, sequence alignment and phylogenetic tools are readily accessible to allow for to individualized directions of research focused on dnd genes.

Here, we will focus specifically on the homology search and alignment problem.