Sentence examples for scripts to parse from inspiring English sources

Polymorphic positions were then extracted, using dedicated Perl scripts to parse the MUMmer output files, with counting of the number of SNPs and indels between the aligned genomes.

We created python import scripts to parse the input tables from the Registry and libSBOL, a python library, to aid population of SBOL structures to generate the RDF/XML form of the data for SBPkb (synbiolib.sourceforge.net).net

We used purpose-written Perl scripts to parse the results of this analysis and identify clusters of core genes.

We wrote Perl scripts to parse the TAIR xml files containing chromosome locations for all genes in the current annotation.

We developed custom Perl scripts to parse BLAST output files and extract the RefSeq protein ID from the hit with the lowest e-value.

Set theory operations (that is, union, intersect) were performed using custom perl scripts to parse the VCF4 files generated by the GATK Unified Genotyper.

We then used a custom Perl script to parse CODEML's rst output file to look for apparent homoplasies (identical nucleotide changes happening on more than one branch of the tree).

Then, we wrote a Perl script to parse the Megablast output.

We used a custom Perl script to parse the results to identify matches that showed frameshifts and/or nonsense mutations.

Additional endothelial cDNA libraries were discovered, using a Perl script to parse raw Genbank flat files, which identified libraries with keywords such as "cell lines" and "endothelial".

We developed a Perl script to parse the files "gene2go.gz" [ 68] and "gene_ontology.1_2.obo" [ 70] in order to generate gene lists for GO terms (as of 12/20/2009).