We employed customized Perl scripts to construct abundance matrices accounting for the number of unique tag sequences per sample for each particular OTU and for each BLAST top hit GenBank gi number.
We only merged sample data of chains with a 2 lnB10-value < 10 [ 67] using a Perl-script to construct a "metachain" [ 119].
The Perl and R scripts to construct the LD plots, as well as the C++ forward simulator used throughout this study, are available upon request.
The current version of primary data (Gene RIFs and Mammalian phenotype ontologies) is downloaded and re-analyzed using existing R scripts to construct the gene list which are then uploaded to the back end database.
Additional file 1: R scripts used to construct the models, perform the simulations and generate the figures.
All the scripts used to construct the models, perform the simulations and generate the figures are distributed in supplementary information (Additional file 1) under an open source license to ensure reproducibility and reusability.
Because of the nature of the script, Caballero had to construct an enclosed 360-degree set, essential for using cinematographer Chediak's system of eight fixed cameras that mimic the spaceship's always-on cams.
Datgan scripts were used to construct both the underlying data tables and the web interface that form GDP. GDP is populated using data from a mouse model of glaucoma.
