Sentence examples for script to assemble from inspiring English sources

This map was then used by the script to assemble contigs that fitted the original genomic sequences without any artefacts that may have been introduced by the assemblers.

To assemble mate pairs with overlapping sequence, a standard overlap alignment algorithm was implemented in the form of a perl script to assemble sequences.

Additional file 1: List of HT genes found in Methanosarcina spp. Additional file 2: ZIP archive with PL/SQL scripts used to assemble groups of orthologous proteins.

Multi locus sequence types (MLST) were assigned using a bash script applied to assembled Illumina data.

AWK and Perl scripts were written to assemble and analyse data on a Linux server.

Specialized scripts were developed to assemble knowledge from all 14 assays to detect gene copy numbers including validation of concordant data (and reporting of discordant data), logically match with consistent pairs of known haplotypes, and report details on all experimental variables examined.

We merged all trimmed reads passing Illumina filtering (PF), aligned merged reads to the PlasmoDBv10.0 genome using GSNAP release 2013-11-27, and then used scripts from Trinity release 2013-11-10 to assemble a genome-guided P.falciparum transcriptome (PASA release 2013-09-07, GMAP release 2013-11-27, Blat v34) [ 75].

MA ran the bioinformatic pipeline used to assemble ESTs, wrote Perl scripts to identify SNPs and created the EST website.

The output of HMMER was processed with a Perl script to reconstruct protein architectures using a positional competition strategy to assemble the predicted protein domains allowing no overlaps.

To assemble mouse SNPs for our database, we used Perl scripts and MySQL queries to retrieve SNPs from the Ensembl 'core'variationion' and 'mart' databases (Ensembl v37, February 2006 and dbSNP v125) that differ between 28 commonly used inbred strains.

The Phred-Phrap-Consed suite was used to assemble trimmed scf-traces with given settings using the PhredPhrap Perl script distributed with Consed [ 35].