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The supplementary R script implements all three methods using R and WinBUGS (Text S1).
This script implements Bowtie [ 57] to map reads to an annotated reference cDNA, and calculates the RPKM according the formula used in [ 50].
This script implements a Bayesian Relative Rates Test [ 116 ], i.e. sums of the branch lengths from a node ancestral to the node of interest and its tips for postburnin trees sampled from the posterior.
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Availability and implementation: A Python script implementing the empirical algorithm is freely available at http://sgjlab.org/empirical-go/.
Our Box Cox and curvature automated transformations are based on a Python script, implemented as an easy-to-use script tool in ArcGIS.
According to the SIA script implemented in the optimized manifold shown in Fig. 1a, nitrate reduction occurred as buffered sample was propelled through the micro-column for 25 s by a peristaltic pump revolving at 50% speed.
For the F-test, the FatiGO script implemented in R was used.
An R script implementing the LRD is available in Text S1.
A script implemented by us was used to align the sequences and to extract the insertions/deletions in Venter's chromosomes, considering three size classes (10 100, 100 1000, >1000 bp), as well as the single nucleotide polymorphisms (SNPs).
We conducted single marker and haplotype TDT association analysis using a custom script implemented in R statistical software and based on Transmit [14], and the equivalent FBAT approach [15] for comparison of the results.
EGN is a script implemented in Perl.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com