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PCR screening for elements that are common to many GM crops (e.g. the cauliflower mosaic virus promoter, CaMV 35S) can indicate of whether GM material is present.
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Screening for repetitive elements was performed using the RepeatMasker software available at http://www.repeatmasker.org/ (Table 1).
Screening for Alvi elements among decapods led us to obtain 36 partial sequences of the pol region (see Additional file 3).
For example, screening for binding elements in RNA sequences comparable to the approach implemented for the PTBs, Nova, and Pumilio in this study could be readily performed for any RBP of interest.
Lock, F. E. et al. A novel isoform of IL-33 revealed by screening for transposable element promoted genes in human colorectal cancer.
Promoters were searched in regions comprising 200 bp upstream of the putative start codon of each ORF by screening for known promoter elements.
For people with type 2 diabetes, screening for the DPN element of the examination should be done using the 10 g monofilament or vibration (method unspecified) [ 4].
The gene structures of these genes were screened for repeat elements using a P. glauca repeat library (see Methods).
The human, murine and porcine GUSB sequences were also screened for repetitive elements using the RepeatMasker database.
The assembled transcripts were also screened for repetitive elements and rRNA using RepeatMasker version 4.0.1 using the default mode [ 35].
The remaining reads continued in the pipeline to be screened for repetitive elements, using the program RepeatMasker 3.2.9 (http://www.repeatmasker.org) against PlantRepeatsDB [ 32].
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