Sentence examples for scoring matrix from inspiring English sources

BLAST searches were performed using the protein scoring matrix BLOSUM45.

Visualization of CPI scoring matrix was performed using java Treeview [47].

Sequences and secondary structures were synchronously aligned, making use of an ITS2 sequence-structure specific scoring matrix [70], [112].

We term this the expectation-deviation scoring matrix (EDSM).

We used FASTA to align peptides to GLEAN proteins, with E-value and scoring matrix optimized for short exact matches (E-value.01 and MD10 scoring matrix).

"-" indicates that a position specific scoring matrix is not available, "+" indicates that it is.

For our examples, we used the 2010 Transfac position specific scoring matrix library (commercial version), [ 22].

Here, evolutionary profile is obtained from position specific scoring matrix (PSSM).

Then, the likelihood scores were extracted from the last position specific scoring matrix (PSSM).

Each merged scoring matrix was analysed using JoinMap version 4.0 [ 48].

However, in common with scoring matrix-based classification approaches, the SBM cannot accommodate gaps directly.