We here use k-mer word scores to visualize trends among sets of motifs, as well as to calculate inter-motif distances for clustering motifs using the HOPACH algorithm [53].
Use of T-score to visualize the absolute differences in BMD makes them more applicable to the clinical situation, as a decrease of 1 SD at the distal radius by SPA has been predicted to give a 50 60% increase in the risk of hip fracture (Cummings et al. 1990 , 1993 Stone et al. 2003).
Heat maps of profile logarithm of odds (LOD) scores were used to visualize the evidence for QTL in the context of a multiple-QTL model.
The average score per cluster was used to visualize the mean phastCons score per class in Fig. 3.
PCA score plots were constructed to visualize the inherent clustering of the samples based on burning.
Score plots were used to visualize the separation of the groups, while the loading plots were used to determine which spectral variables significantly contributed to the separation of the samples on the score plots.
The prevalence of heart disease increases with age, and age is included as an independent parameter in the Heart Score model used clinically to visualize risk levels and to guide patients and their GPs on initiating preventive treatment with statins or equivalent products.
If the model is assigned a low score, it is easy to visualize the discrepancy of the model with the conservation pattern by projecting it on the structure using ConSurf (Glaser et al., 2003), as we have done in the examples in Figure 1 and Supplementary Figure S4.
One way is to visualize scores as a heatmap of k-mer versus sequence position.
However, for completeness, we use both scores to fully visualize an individual's morphology (Fig. 4).
Despite the loss of her ability to visualize the score, her playing had lost none of its brilliance.
