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Therefore, a Friedman rank test was used as an alternative and is reported with z score (significance) and effect size (d) calculated by Z/√n.
The enrichment score significance is assessed by 1,000 permutation tests to compute the enrichment p-value.
We assessed network score significance with two tests.
The LOD score significance thresholds for two-QTL scans were determined by using 1000 iterated permutations.
The LOD peak of the QTL was 3.65, and the genome-wide LOD score significance threshold was 3.62.
In subsequent stages, the sequences in S are scored with the subfamily HMMs using the SAM hmmscore program, selecting sequences for alignment based on score significance.
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Finally, the Z-score significance of a contact residue with a specific potential score is determined according to this null distribution.
Test scores, significance values and confidence intervals are presented in Table S2.
We will also be exploring permutation testing approaches for evaluating implication-score significance.
Genes were sorted based on their "z-score" (significance), reflecting their association with distant metastasis-free survival time ("DMFS") time.
Because direction rarely changes, we found it informative to simply look at the differences between the G-score significance of links.
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