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This list of all acetylated peptides detected included the precursor m/z, charge state, retention time, search score, sequence, modification, and protein name for each acetylated peptide.
The sequences were quality filtered on the basis of quality score, sequence length, chimera and primer mismatch thresholds.
We regarded a region with nonzero affinity scores within the score sequence as the regulatory region.
MOWSE probability score, sequence coverage, pI, and molecular weight values were used to identify the most likely candidate protein for each band.
Details of the protein identifications, protein score, sequence coverage, theoretical pI value and molecular weight as well as average relative change are shown in Table S1.
Conservation score: sequence conservation score for each alignment position was evaluated consulting a standard 20 × 20 substitution matrix (Johnson and Overington, 1993).
Similar(46)
Such fine-granular score sequences are combined with segment proposals to detect action instances with precise boundaries.
To diminish probabilities of misalignments, we used score sequences defined by STAT-Scanner as a first approximation of the conserved regulatory regions.
Recalibration used read group, reported quality score, sequencing machine cycle and sequence context as covariates.
Quality score sequences were obtained from tracefiles using PHRED [ 56, 57].
Within each material score, sequences are ordered by individual as follows: AN1, CR8, EU7, HA7, EV0, AM7 and CE0.
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