Exact(1)
The severity of RA was evaluated using the Sharp scores with the joint space narrowing as well as the erosion score segment [ 20] which evaluates joints of the hands by two independent readers (blinded to each other) as follows: Sharp Erosion Score which evaluates 34 joints of the hands (total sum of points: 170).
Similar(58)
This pair of the seed of query sequence and the part of the subject sequence with their score is called high scoring segment pairs (HSPs).
The top high-scoring segment pair from the best hit was mapped to a fragment recruitment matrix with an x-axis representing the coordinates of nucleotides within the mitochondrion genome and the y-axis representing the identity of the hit.
Only the high scoring segment pair to each amplicon sequence was kept.
Values considered were the ones obtained using formula 2 (identities/high-scoring segment pairs HSP length).
In the event of multiple high scoring segment pairs, one was chosen randomly.
The lower scoring segment is removed as a possibly erroneous extension.
Briefly, given a pair of sequences, CSTminer identifies high scoring segment pairs (HSPs) through a Blast-like sequence comparison.
The exons and exon boundaries were identified from the TBLASTN output as high scoring segment pairs or gaps within these segment pairs.
When the High-scoring Segment Pair (HSP) and matched amino acids both covered ≥99% of the query length, we recorded a hit.
The position of each αCNS was studied for overlap with any blastz HSP (high scoring segment pair) between the At and Br genespaces.
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