Sentence examples for score pathways from inspiring English sources

That is, it can construct and score pathways consisting of any number of building blocks.

For this application, the chemical-wise slice results are normalized to the interval [0,1] by dividing each chemical result by the slice maximum, where results represent relative potency (in vitro assays), bioavailability (chemical properties), or perturbation score (pathways).

There are also software tools which enable the user to take advantage of a gene filter (e.g. based on quality score, pathway, gene-ontology, OMIM information) and different biological databases when performing the functional annotation.

Table 2 contains the top scored pathways for each strain at FDR q<0.05, while a full list of affected pathways at recommended q<0.25 is shown in Tables S3 S6.

We begin by defining some key concepts, a scoring function for pathways and a computational problem of finding branching, high scoring pathways.

Visual perception) and retinoid metabolism, both highly specific for retina tissue, were among the top ten scored pathways maps.

Of the eleven P450s for which a wrong pathway was predicted based on co-expression analysis, three had the correct pathway present within the ten highest scoring pathways.

The resulting network of direct physical, transcriptional, and enzymatic interactions between mammalian orthologues was used as a template to organize the disease-associated genes into statistically scored pathways.

Since identical top scoring pathways were obtained with both datasets, the analysis was largely restricted to the smaller 5× dataset, unless otherwise noted.

Two high scoring pathways are particularly interesting, because the PN/PS ratio of their African SNPs is larger than the PN/PS ratio of their non-African SNPs.

Standard gene enrichment analyses usually ignore regulation signs when scoring pathways [ 21, 22], but like some newer gene enrichment methods [ 23], NPA assessment methods integrate both types of causal signed relationships of the biology to the measurements for their output.