Sentence examples for score of the structure from inspiring English sources
It begins by making the assumption that a node has no parents, and adds gradually with those that most increase the score of the structure.
The QMEAN Z-score of the lysozyme structure is 0.5, i.e. the score of the structure is clearly within the expected quality range as it deviates less than 1 standard deviation from the mean score in similar sized high-quality proteins from the reference dataset.
The quality of the model was evaluated by the ProSA server (https://prosa.services.came.sbg.ac.at/prosa.php) [ 16]; the z-score of the structure (−3.6) is within the range of scores typically found for native proteins of similar size.
Only the score of the consensus structure is given, the structure itself is not shown.
Likelihood-based methods, where the maximum likelihood or maximum conditional likelihood principle is used to estimate the parameters of the model (e.g. Do et al., 2006); and Large-margin methods, where the model parameters are estimated to maximize the margin between the score of the true structure and the second best structure.
The x-axis is a distance from the starting position, and the y-axis is the score (energy) of the structure.
The DOPE (Discrete Optimized Protein Energy) score of the protein structure of WT and HTM was similar (-71451.57031 and -71297.08594 respectively) suggesting the high quality of the models.
Then, each individual is evaluated with K2, which returns the score of the best structure as the fitness of the individual.
The Pearson correlation in this case was 0.827, and the score of the native structure (Fig. 4A; vertical line) was higher than the scores of all the decoys except three.
Figure 1C shows the Interface Root Mean Square Deviation (IRMSD) from the native complex vs the PIPER energy score of the docked structures.
The (re- scoring of the model stre- scoringdofe via comparing the two structures, the native temodele structure and the target model structure vis a structural alignment methodone
