We then developed a schema for classifying the editors' phrases, using an iterative approach.
In addition to the GBrowse and Chado database schema, we have incorporated the Apollo Annotation Editor [ 7], and XORT and GMODTools for bulk data exchange in and out of our Chado database, respectively.
The guideline's natural language narrative text is marked up using the GEM Cutter editor to populate the GEM XML schema.
To make use of our approach, we have developed a toolset which offers a graphical editor through which the designer can draw his/her schema, invoke the Prolog translation and analyzer, and receive graphical and/or textual analysis reports.
Source codes of the Web interface, PathCaseMAW editor, SBML Parser, as well as the database schema are available on request for academic users to create their own networks and to host/access them.
yEd Graph Editor [ 20] was used to draw the pipeline schema.
In the recently released book Star Wars Psychology, the book's editor Travis Langley writes about Jean Piaget's notion of "schemas".
For the first draft of the schema, CM and KD reviewed the phrases and documents from the editors' discussions and assigned them to 20 categories related to medical editorial decision-making and publication bias (as defined above).
This means that, when the database schema is changed (e.g. to add new object type), the upper layer code (e.g. the editor GUI) stays the same, providing flexibility.
These include Chado [ 2], a database schema for genomic data, several genome synteny browsers [ 3 5], the Galaxy workflow engine [ 6], the Apollo genome editor [ 7], the MAKER genome annotation pipeline [ 8] and the BioMart federated data mining engine [ 9].
