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To determine interscan variability, the mean differences in SUVs from each of the three baseline PET scans were calculated by Bland-Altman analysis.
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The total number of bases scanned was calculated by subtracting 20% of the product size, to take into account the primer base pairs and terminal regions that escape detection.
Finally, the inter-B-scan phase-differences were calculated by subtraction of the phase information for each set of B-scans.
I-V curves were obtained by both reverse scan and forward scan, from which the photovoltaic parameters were calculated by taking the average of them.
Differences in loading were calculated by scanning and quantifying the staining of each of the cell lines on the Coomassie blue stained protein gel.
The concentrations of MMP-2 and MMP-9 were calculated by scanning of the gels using an image densitometric system (Kodak Image Analysis System Kodakk, Rochester, NY, USA).
For each TF-DHS pair, the similarity scores were calculated by scanning the PWM of the transcription factor along the sequence of DHS site and the maximum score was selected as the binding affinity between the transcription factor and DHS site.
Degradation ratios were calculated by image scanning method as indicated in the equation given in the Materials and methods section.
The QD density and average diameter and height were calculated by the Scanning Probe Image Processor software.
Their relative expression levels were calculated by gel scanning (Fig. 2a and b).
10,000 A-scans were acquired and phase-difference values were calculated by subtracting a time-shifted version of the data from the original data.
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