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Additional File 8 contains the raw outputs from Weeder, oligo-analysis, and results of scanning previously proposed consensus sites against the promoters of predicted WT1 targets.
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Patients with shorter disease-free interval (p = 0.08) and multiple sites of recurrence (p = 0.05) tended to have greater numbers of findings on CT scan previously unsuspected.
The mean of all functional images was then co-registered to the anatomical scan, previously corrected for intensity inhomogeneities.
Interpretations of images are particularly difficult for species that have not been scanned previously or for which there is little anatomic data (Cranford et al. [18]).
We applied a bias correction to the time 1 T1-weighted scans previously coregistered with the time 0 T1-weighted ones, and to the time 2 T1-weighted scans previously coregistered with the time 1 T1-weighted ones, to make them comparable.
Genotyping data were collated from genome-scans previously performed for other projects.
A 3D model of the pelvis was then generated based on the scans previously obtained, and all measurements were performed.
The Resolver System ratio-splitting operation was used to generate intensity profiles from the set of ovarian cell line ratio scans and breast cell line ratio scans previously described (Finn et al, 2007).
Following hybridization, the slides were washed and dried by centrifugation at 300× g for 10 min before scanning, as previously described [40].
The precision and repeatability of the two-pod 3dMDface system used for scanning was previously reported to be submillimeter [ 21].
A substudy was conducted at five clinical sites to measure longitudinal changes in bone density and body composition by DXA scanning as previously described (9).
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