Sentence examples for scanning of the sequence from inspiring English sources

Scanning of the sequence compositions revealed that certain miRNAs were predominantly substituted at specific positions, even at the seed positions (Figure 3A).

This approach was proved to be effective in the prediction of such spaced dyads, however, the exhaustive enumeration of dyads, the computation of the background and the scanning of the sequence for each candidate makes the computation imposing and not scalable with the size of the components.

A general scan of the sequence was performed using Scan PROCITE [ 58].

Under this assumption, we performed a preliminary scan of the sequence polymorphism of the flb region in a collection cultivated and wild grapevine genotypes.

The number of mismatches between a pair of sequences can be computed with a simple scan of the sequences, whereas computing the edit distance (allowing for indels) requires a more sophisticated algorithm such as the Smith Waterman sequence alignment algorithm (Smith et al., 1981), whose runtime is proportional to the product of the sequence lengths.

Taken together with the ability of stable hairpins to inhibit pMHC I presentation efficiency shown in functional assays [10], this result shows that initiation at CUG start codons, unlike IRES mediated initiation, requires linear scanning of the 5' mRNA sequence beginning at the 5' cap.

Systematic alanine scanning of the AQP0 237–256 sequence (LKGTRPSESNGQPEVTGEPV) revealed that replacement of Arg241 with alanine eliminated AKAP2 binding, and substitution of the surrounding residues Lys238, Thr240, Glu244 or Asn246 reduced AKAP2 association with the immobilized peptide (Fig 3H).

However, computational scanning of the target exonic sequence for previously reported SELEX consensus RNA binding sequence recognized by B52 [40], [40], failed to reveal any match to this sequence, suggesting that B52 interacts with a set of distinct RNA sequences to regulate the eyeless splicing event.

We then used HMMER3 to scan each of the sequences in our network for domains.

The alanine scan of the GIP1 14 sequence established that the peptide was extremely sensitive to structural perturbations.

Notably, our scan of the multiple sequence alignment of Emx gene products detected homopolymeric amino acid (HPAA) tracts (also known as homopeptides or amino acid tandem repeats) co-occurring between the peptide sequences of sea lamprey EmxA and -B.