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After removal of samples that did not satisfy quality control, 3209 patient and 3692 control samples remained available for analysis (success rate, 98%).
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From the 126 samples hybridized to Affymetrix HG_U133 Plus 2.0 oligonucleotide arrays, 113 chips (71 P, 42 NP) satisfied quality control thresholds.
Non-Destructive controls during welding work allow to keep parameters inside bounds and to satisfy quality requirements.
GreenGenie2 predicts 11,135 models in the v4 assembly that satisfy the quality control constraints discussed previously.
Therefore, controlling analytical variability to satisfy rigorous quality control requirements for blood-based clinical testing using MRM-MS platforms has been challenging.
Up to three more colonies for genes that did not satisfy our quality control inspection were picked (total colonies picked = 753), and rescreened by repeating the bacterial colony PCR step.
All the specimens tested satisfied this quality control regulation.
Nimblegen only returned data for hybridizations that satisfied their quality control criteria.
SNPs that did not satisfy the following quality control criteria were removed: Call Frequency < 0.99, GenTrainScore < 0.70, AB R Mean < 0.35, MAF = 0 and number of inconsistencies with the genealogy > 9.
First, SNPs that did not satisfy the following quality control criteria were removed: Call Frequency < 0.99, GenTrainScore < 0.70, AB R Mean < 0.35 and number of inconsistencies with the genealogy > 9 (see Saura et al. [ 3] for further details on the filtering criteria performed).
In this case, only ten samples, or five pairs, satisfied our stringent quality control criteria.
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CEO of Professional Science Editing for Scientists @ prosciediting.com