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Normally, it takes about three loops to generate satisfactorily aligned PSs (Section 4.4).
AAT34Tc could not be satisfactorily aligned and so was not included in the analysis; this left a total taxon set of 93 individual sequences (derived from 35 loci).
A manually adjusted multiple sequence alignment based on encoded amino acid sequences was generated using Se-Al [ 56]such that MP-CP and Rep-RepA regions were satisfactorily aligned.
Alignment-ambiguous regions (highly variable regions of sequence which could not be satisfactorily aligned), were removed from the data sets in Myo15, Otog and Cldn14, while keeping the alignment in frame.
Similar(56)
We compared structure alignments generated by several protein structure comparison programs to determine whether existing methods would satisfactorily align residues at a highly conserved position within an immunogenic loop in ribosome inactivating proteins (RIPs).
"The stars are aligned".
The planets are aligned.
The stars aligned.
Why? "It aligned me.
Doors should be aligned.
"Finally everything is aligned".
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CEO of Professional Science Editing for Scientists @ prosciediting.com