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Figure 5 demonstrates that considerable power gains can be achieved by sampling strain pairs that are close genetic relatives (low s).
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By sampling strains that differ in Stx profile, we were also able to assess the variation associated with different Stx genotypes within and between O157 H7 clades.
In the future, more phylogenetic information might be provided by sampling strains branching at the base of the Rhizobium/Agrobacterium group.
In our case, a j now estimates the dosage effect of strain j when combined with another sampled strain.
This indicated that the identified strain was exactly the same as the sampled strain in the metagenome.
Furthermore, Sigma did not find any SNP between the sampled strain and the identified reference strain with 100% genome coverage.
When a sampled strain is not present in the reference genome database, Sigma can identify its closest relative and detect SNPs between the sampled strain in the metagenome and the identified strain in the database.
Only 0.44% of sampled strains were nonsusceptible to linezolid, compared with 0.45% in 2006.
Only 0.36% of sampled strains were nonsusceptible to linezolid, a slight decrease from 0.45% and 0.44% in 2006 and 2007, respectively.
Indeed, the high level of genetic diversity observed between Bti strains was essential to effectively characterize the origin of sampled strains.
It indicates some groups are well resolved with little between-group gene exchange since the last common ancestor of the sampled strains, e.g., Ho636 and Hv648; and25 AMC35MC35.
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CEO of Professional Science Editing for Scientists @ prosciediting.com