Sentence examples for samples with gene from inspiring English sources

Group samples with gene expression correlation coefficients ≤0.95 were excluded (one KO sample).

We learned regulatory interactions on a dataset of 1936 TCGA tumor samples with gene expression and copy number data, from 11 tissue types.

In this study, we analyzed the 129 TCGA (The Cancer Genome Atlas) squamous cell lung carcinoma samples with gene expression, microRNA expression, DNA methylation, and CNV data.

To validate our findings, we performed a similar assessment on an independent publicly available sample cohort (GEO GSE14333) (Jorissen et al., 2009), consisting of 115 stage II/III human CRC samples with gene expression profiling and survival data.

PRIME is given the following three inputs: (1) a set of p samples with gene expression levels; (2) the p samples' corresponding growth rate measurements; and (3) a generic model (the human model, in our case).

The vote of gene i towards x is then V i (m ) = w1 * Q i h,1/Q i h where Q i h = w1 * Q i h,1 + w2 * Q i h,2, is the adjusted total number of training samples with gene i's state being h, with Q i h,1 and Q i h,2 being the numbers of class I and class II samples with gene i's state being h, respectively; w1 and w2 are the sample size weights as defined previously in.

Similarly, there was no significant relationship between methylation of any cell cycle gene (comparing samples with no genes methylated to those with any genes methylated) and self-reported asbestos exposure.

In case of Affymetrix platform, 180 samples overlapped with gene expression and enzyme activity data.

We first used an unsupervised hierarchical clustering approach to organize and explore the data and highlight groups of genes and groups of samples with similar gene expression patterns[16].

The TMM method scales read counts by the weighted log-fold-change values of a reference sample with genes that have extreme log-fold-changes (M values) and extreme absolute expression levels (A values) removed from the data.

Among the five samples with p21/Waf1 gene deletions, none of them simultaneously carried a p53 or retinoblastoma (Rb) gene mutation.