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Seven MM and nine control samples were eliminated from further analysis due to a low call frequency (< 90%).
Poor-quality RNA samples were eliminated from further analyses.
Genes with " absent" calls across samples were eliminated from consideration.
Two of the tumor samples were eliminated from further analysis secondary to their low methylation levels.
Genes with less than 2.5 fold change across samples were eliminated from consideration.
Probes with detection P values >0.05 in any of the samples were eliminated from the study.
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Any gene consistently below a background threshold level of D = .98 for all samples was eliminated from further analysis.
Any gene consistently below a background threshold level of D =.98 for all samples was eliminated from further analysis.
Those who used CSII were reported to have some form of vascular complication (hypertension, retinopathy and/or nephropathy) at a similarly high frequency to non-CSII users (55.6% affected versus 53.8%), but overall nearly 40% of the sample were eliminated from these analyses due to incomplete data (n = 428 included).
For each round of the leave-one-out experiments, one sample was eliminated from the training set and the remaining samples were used to train the SVM classifier.
The genomes, which are present in the simulated sample, are eliminated from MetaPhyler reference database.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com