Sentence examples for samples copy from inspiring English sources

This cohort contains mutation data for 507 samples, copy number data for 778 samples, expression data for 526 samples and methylation data for 311 samples.

For the remainder of the samples, copy number calling was done jointly on KIR3DL1 and KIR3DS1 using unsupervised clustering with a finite mixture model.

In three samples copy number imbalances were detected in chromosomes 11 and 22 affecting the FLI1 and EWSR1 loci, suggesting that an unbalanced t(11 22) and subsequent duplication of the derivative chromosome harboring fusion gene is a common event in ESFT.

In a screen of human melanoma tumor samples, copy number greater than 1,000 for IL-1β was present in 14 of 16 biopsies, whereas none expressed IL-1α. [ 29] Similar findings were observed for colon carcinoma and non-small cell lung carcinoma.

In cell culture samples, copy numbers ranged between 5.3 × 10 and 1.4 × 10 copies/μL (median 7.0 × 10) of DNA extract (Table 4).

Thus, in samples where copy number loss is detected on several chromosomes the lowest estimate of C2N for a chromosome has the smallest contribution from 2N tumor cells.

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A set with 100 artificial patients was built using randomly sampled copy number values from the GBM data.

cnvHap updates the positions of these cluster positions within a generalized expectation maximization framework and then reports the per-sample copy number genotypes (Fig. 3).