Sentence examples for sample with genotype from inspiring English sources

The genetic and IV analyses on the associations between genotype and cognitive and physical capability were conducted on a subset of the observational sample with genotype data.

To gain further functional insight, eQTL analysis was performed for all SNPs in LD (r 2 ≥ 0.2) with the index SNPs using the GTEx portal (V6, dbGaP Accession phs000424.v6.p1)24 to query RNAseq data from breast mammary tissue in 183 samples with genotype data.

For the set of 400 samples, we have 137 samples with genotype AA, 81 samples with genotype GG and 182 with genotype AG for rs1426654.

Quality control was performed, first by excluding both SNPs and samples with genotype success rates below 95%, with the help of the Genotyping Data Filter (GDF) [41].

Genotypes were quality controlled with the following criteria: individual samples with genotype call rate <90% and markers with call rate <96% or Hardy Weinberg P-value <0.001 were excluded from analysis (see supplementary material –SOM, for summary of locations, markers tested and analysed).

Using this method, we detected 20 samples with genotype mixtures.

We also applied the WTCCC filter of excluding DNA samples with genotype call rates below 97% in order to remove poor quality DNA samples and genotype calls (12).

Transcript clustering identified age as the greatest driver of variation in the 4 and 6 months samples, with genotype being the second major driver.

We applied creQTL mapping to a study of 52 endometrial tumor samples with genotype and expression data available (NCBI GEO 14860; [ 27]).

We observed only moderate linkage disequilibrium (LD) between rs2075650 and rs429358 (ra = 0.553) and low LD between rs2075650 and rs7412 (ra = 0.014) when analyzing all samples with genotype data of rs2075650, rs429358, and rs7412 (na = 8946).

We attempted to exclude samples with genotyping rate less than 95% but none of the samples met this criterion.