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The "Array" and "Sample" terms are treated as random whereas "Dye" and "Origin" are fixed terms.
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Because Mendelian sampling terms are correlated between offspring of the same queen, sampling terms were constructed as the sum of two independent components: a component specific to each individual and a component common to all offspring of the same queen.
Because Mendelian sampling terms are mutually independent, the covariance matrix of these terms is diagonal, which facilitates inversion.
In honey bees this is not the case for full-sibs, because they may descend from the same drone, in which case their paternal Mendelian sampling terms are identical.
As a consequence, Mendelian sampling terms of full-sibs are correlated, such that the covariance matrix of Mendelian sampling terms is not diagonal.
Consequently, our estimates of Mendelian sampling terms were likely not as accurate as those obtained in animal species.
As a result, the matrix of Mendelian sampling terms is diagonal again, but the weighting of information of relatives is approximate.
This estimate indicated how much the usual MME assumption of zero expectation for the Mendelian sampling term was violated.
The mean Mendelian sampling term was estimated as the mean difference between the young sires' EBV and their parent average across all the YS included in each scenario.
Briefly, the Mendelian sampling term was calculated as the difference between an animal's TBV and the mean TBV of its parents.
The mendelian sampling term was calculated as the difference between an animal's TBV and the mean TBV of its parents.
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