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The BSP derives from a coalescent process used to estimate the effective number of infections through time from a sample of gene sequences.
TERA explores all reconciled gene trees that can be amalgamated from a sample of gene trees.
These results indicate that WGD pairs provide a good sample of gene duplicates in general.
The null hypothesis is that the random sample of gene expressions of g i comes from the Weibull distribution F(i )(x).
The optimal tree recovered will only contain clades found in the input sample of gene trees, but it will not in general be found in the sample itself.
To find the optimal gene tree, clades found in the input sample of gene trees are combined using the amalgamation approach in order to recover an optimal tree with respect to our scoring scheme.
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These methods consist essentially of taking a sample of genes and finding out how many are variable and how variable each one is.
Generally, the length of exon can be approximated from a limited sample of genes.
To detect a possible donor taxon, we first analyzed the phylogenetic trees of a random sample of genes from Set SAO.
We asked 52 scientists worldwide to assess a sample of genes and assign a score within a 10-point scale, with 1 indicating a completely uncharacterized gene and 10 a gene that is fully described.
To evaluate indices for large scale identification of genes under balancing selection, analysis was performed on a prospective sample of genes encoding surface-accessible proteins in a single parasite stage.
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