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On average, 3.3 M reads were obtained for each sample and approximately 60.4% of the reads from each sample mapped to the F. vesca reference genome.
For FFPET samples, an average of 2 million reads per sample mapped to within 1KB of an annotated gene on the reference genome, and for frozen samples an average of 1.2 million reads per sample mapped to within 1 KB of an annotated gene on the reference genome.
Approximately 40% of reads from a sailfin molly sample mapped to the guppy data set.
About 50 90 % of the reads for each tissue sample mapped to the human genome.
On average, 17,474 sequence reads per sample mapped to the mtDNA genome (Additional file 1, Table S2).
28% of the reads from MCF-7 sample mapped to unique regions of the human genome (Table 1).
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The remaining AML samples mapped to a space between the GMPs, monocytes and CMPs (referred to as group "MP-AML", Fig. 6b).
If no cluster contained more than one sample, all samples mapped to the sub-facet were removed.
All the samples mapped to a greater proportion of the VCGs and YH genome compared with the GRCh37 reference genome.
Irrespective of the organisms, samples mapped to their corresponding raw file identifiers are vital for running large-scale analysis.
Approximately 35% of the reads from the control samples and approximately 53% of the reads from the fed samples mapped to the reference set (data not shown).
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