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The sample identified in this study was drawn from a population size of 28 million passengers in 2016.
The post-seroconversion sample was the first HIV-1 positive sample identified in individuals tested at three monthly intervals, therefore within three months of seroconversion.
A further overlapping sample identified in the same way (January 2008 to December 2009) consisted of all those who were diverted from the same remand prison to hospitals at various levels of therapeutic security over a two year period.
The filtering steps applied on the 716 germline variants, with an average of 64 variants per sample, identified in all COAD individuals (Supplementary Table 3 Germline), are shown in Fig. 3b.
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Seven (0.37%) of 1,906 samples identified in-country as HIV NEG were found to be HIV-positive.
Two (0.63%) of 317 samples identified in-country as HIV POS were found to be HIV-negative.
Fig. 4 SIRM evolution at low temperature (<300 K) for the three types of samples identified in Hole C0008A.
The isolates from single AFP cases, healthy contacts and environmental samples identified in other episodes, are together likely to correspond to several thousand infections.
The sub- or pre-clinical transfusion related infection was in a codon 129 heterozygote and genotyping of positive appendix samples identified in a screening study confirmed valine homozygosity in 2 of 3 samples tested.
Y1 samples identified in Africa are more likely to be the result of a recent introgression of European cattle rather than the expansion of a genetically heterogeneous sire population domesticated in the Fertile Crescent.
The BOLD reference database failed to return an identification for escolar, and yielded a top match for all samples identified in the other databases as bigeye tuna or yellowfin tuna as blackfin tuna.
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