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We also designed a query by sample function, in case the specific strain ID in a dataset is meaningful.
We then employed the sample function in R to return a random permutation of each ordered collection.
To assess possible sampling effects on estimated proportions, vectors with assignments of reads to TE families were resampled 999 times with replacement to estimate the distribution of proportions using the sample function in R Cran.
In order to determine the random occurrence of enriched GO-terms, we used our experimental expression array data set and randomized the gene names associated with expression values using the "sample" function in R, and used in the following context: sample x, length(x), replace = FALSE, prob = NULL) where x is a vector of gene IDs.
To allow for a genomewide scan and condition only on the number of SNPs detected, we define effect sizes and standard errors for all SNPs in the scan and sample without replacement using the total power π l + π r as the weight (we used the sample function in R).
In order to proceed with a manageable data extraction phase, in terms of time and available resources, whilst keeping the data representative of the literature, a sample of articles was randomly selected (Additional file 1 (AF1)), using the sample function in R 2.12.1.
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Selection of random subsets of patients was performed using the random sampling function in Microsoft Excel (Redmond, WA, USA).
Statistical tests were adjusted for the clustered (by school) sampling strategy using the complex samples function in SPSS; clusters were equally weighted because the sample is representative of public schools in Cape Town.
In each case, exposure of samples to molecular oxygen at room temperature induces an increase of sample work function in a range of several tenth of eV.
Algorithm 3 shows the whole process, where GetCoins is a random coin generator, HYGEINV is the HGD sampling function instance in MATLAB.
A multidimensional scaling (MDS) plot was used for the visualization of the variability among samples (function implemented in EdgeR).
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