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Sample datasets are available on Zenodo (https://doi.org/10.5281/zenodo.1288783).org/10.5281/zenodo.1288783
Test sample datasets are provided for the users.
However, when too few sample datasets are chosen, noise inherent in the microarray data will also affect the results obtained from 'condition-dependent' GCA.
The bootstrap sample datasets are from the original cancer dataset; we used sampling with replacement with a default iteration of 1,000 times.
Availability: Source code implemented in R, as well as text files containing examples and sample datasets are available at http://www.bios.unc.edu/research/genomic_software/DiNAMIC.unc.edu/research/genomic_software/DiNAMIC
The formats of input and output files and the availability of sample datasets are summarized in Table 3. PowerGet is a standalone Java software package for detection, alignment, and annotation of metabolite features from data obtained using LC-high-resolution-MS (HRMS).
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Sample datasets were provided for the purposes of the evaluation.
Three sample datasets were selected using the pre-processing technique described in the previous section.
Two military and one control user sample datasets were identified from one state in the West Coast ((p_{3}), (p_{10})), South East ((p_{22}), (p_{23})), and South Central U.S. ((p_{12}), (p_{15})).
Availability and implementation: An R package containing examples and sample datasets is available at Bioconductor.
Therefore, a sensible strategy for small sample datasets is to set up the minimum size of restscore groups in a way that leads to 4 restscore groups.
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