Sentence examples for sample backbone from inspiring English sources

Shakhnovich group also described a method that can directly sample backbone angles using a trimer library (Chen et al., 2007; Yang et al., 2007).

Residues 115 124, between the PPXY motif and the acceptor lysine, were allowed to sample backbone torsion angles, and the models were filtered by lowest energy and RMSD to the crystal PPXY motif.

Application of BP-Rex MD to several protein loops indicates improved conformational sampling of backbone dihedral angle of loop residues compared to conventional MD simulations.

Samples for backbone resonance assignments comprised either 0.5 mM U-[13C/15N]-MA U-[13C/15N]-MA U-[13C/15N]-MA 2 mM 16 mer DNA as shorn in Fig. 1B.

Successful modeling within this setup validates our strategy for sampling peptide backbone conformations and rigid-body orientations, and our energetic ranking ability within the setting of an accurate receptor backbone structure.

The second high-resolution refinement stage provides for side chain conformational sampling and backbone relaxation.

For example, Joe et al. described an iterative folding method (DeBartolo et al., 2009), which folds a protein by mimicking folding pathway and explores the conformation space by directly sampling the backbone angles using a trimer library.

At the time of sampling, NRTI backbones were tenofovir/emtricitabine (37/50, 74%), abacavir/lamivudine (10/50, 20%), or zidovudine/lamivudine (3/50, 6%).

"We take backbone samples to the lab to study how sharks age," Dr. Natanson said.

"Sampling is my backbone philosophy," he said one afternoon in the mostly white loft where he lives.

Amino acid substitutions predicted to improve catalysis in design calculations involving extensive backbone sampling were individually tested.