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Due to Illumina sequencing error rates, a VAF threshold of 0.02 was required to call an SNV positive in a sample, and considering that most samples have an average of about 50% normal cell 'contamination', we likely missed minor subpopulations.
Different diversity indices and other characteristics of the analyzed loci are presented in Table 1, which also includes per segment Fst values for the whole population sample and considering only non-African groups.
The size of effect the study is powered to detect (one half of a portion of fruit/vegetable) was chosen because it was considered the smallest improvement in intake that was worthwhile detecting with an achievable sized sample, and considering the nature of the intervention.
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This should include offering a range of programmes running across a number of different subject areas, enabling students to sample and consider other views and approaches.
Here, we consider the target as positive sample and consider the background as negative samples.
The numerical model comprises the loading frame, the hydraulic pistons, the shear boxes and the sample and considers the measuring devices.
to examine the social correlates of pre-pregnancy overweight and obesity in an Australian population-based sample and consider implications for intervention effectiveness during pregnancy.
We use taxable income series calculated from the actual financial data for individual firms in our sample, and consider the entire horizon of the carry-forward sample.
If the child was eligible but the primary caretaker refused to participate, the child was kept in the sample and considered a refusal.
Note that the Yang et al. (2004) study, which is based on a larger sample and considered more representative for non-Western regions, was used to calculate an upper range for regions with unknown levels (Latin America, Africa, Oceania).
They also validated variants based on their dissimilarity with the four most commonly found variants in a given sample and considered more distinct variants as more likely to be true alleles.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com