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Of note, although the initial association for FTO with BMI was identified by SNP rs9939609 [22], numerous subsequent studies have used different SNPs, all of which capture the same common haplotype (HapMap CEU frequency = 0.425 (Figure 1)).
Our data showed that the two variants 194Trp and 399Gln were not in the same common haplotype.
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All six Iberian populations included the same most common haplotype 263G 315.1C that represents the most common HVS-I/II haplotype in west Eurasia (here grouped under hg R0).
Using the same definition of common haplotype, the coverage of common haplotypes of the block can be formulated as a form of diversity as follows: (3) δ C (B ) = 1 − ∑ s i ∈ C p i ∑ s i ∈ U p i = ∑ s i ∈ M 1 / m ∑ s i ∈ U p i, where U denotes unambiguous haplotypes, C denotes common haplotypes, and m denotes singleton haplotypes.
We proceeded in the same way to determine the common haplotype and the possible phase at each marker in each individual up to the first marker where the individual carries alleles that were not shared with other affected individuals.
For those with two or more heterozygous positions, one haplotype was assumed to be identical to a common haplotype found in other individuals of the same species.
Clones SCA-6 and SCA-12 have not a common haplotype, thus they are not derived from the same mother tree, which casts doubt on the number of trees at the origin of the other clone series.
The most common haplotype, japonica-haplotype I, was shared with 65.4% of DPRK accessions and 66.7% of temperate japonica accessions from the Mini-Rice Diversity Panel.
The most common haplotype AATT (i.
Assessments of risk among common haplotypes tested the simultaneous effects of all haplotypes combined in logistic regression; individual haplotype associations used the most common haplotype as reference.
This analysis found high haplotype and nucleotide diversity (44 haplotypes), with the most common haplotype distributed globally.
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