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We compiled assignment probabilities for multiple runs in the program C lumpp, which addresses multimodality and/or label-switching in run comparisons [ 45].
The assignment probabilities were compiled for multiple runs in the program CLUMPP, which addresses multimodality and/or label-switching in run comparisons [ 30].
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(Here's an interview with Daney that ran in the program booklet, which I still have somewhere).
Running in the program's Series B is a new drama by Will Scheffer, a creator of the acclaimed television series "Big Love," which came to its conclusion this year.
The character-taxon matrix was assembled in Mesquite v.2.6 [46], and run in the program PAUP* 4b10 for Macintosh PPC [47], with additional analyses conducted in TNT 1.1 [49], [49].
A t-test was run in the program R to determine if the deletion strains were significantly different from the wild type.
Parsimony searches were run in the program TNT version 1.1, which we also used to run 500 jackknife (character removal 36%) replications to assess node stability [33] (hit best tree five times command, keeping 10,000 in memory).
All tests were run in the program FSTAT version 2.9.3.2 [ 59] and the significance of different test results were determined by performing 10,000 randomizations.
The 352 trimmed alignments remaining, comprising 170,965 aligned amino acid sites, were concatenated using fascon cat[ 87], and a partitioned maximum likelihood (ML) phylogenetic analysis run in the program raxml[ 88].
Things don't always run smoothly in the program.
Money is a running footnote in the program.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com