Sentence examples for running alignments from inspiring English sources

However, a more focused approach by (1) utilizing the C-terminus conserved region as an alignment reference point for all vsps, and (2) gradually adding additional, longer upstream sequences allowed us to identify minor clades of vsps for running alignments, generating trees, and testing for evidence of recombination.

To reach this goal, a continuously running alignment monitoring system is essential, which consists of several thousands of optical and temperature sensors.

The BAC-contig was constructed by running alignment searches of seven markers (D1S508, GATA4H04, D1S214, GGAT3G03, D1S160, D1S503 and D1S244) and all available BAC-end sequences on 'Golden path' at UCSC.

The pipeline runs alignments with both default and relaxed parameters.

Although convenient, these suffer from the same public service limitations, and many of the > 20 000 users of Jalview requested the ability to run alignments locally on their workstation or to deploy the same services on their institution's cluster.

This bisulfate mapping tool aims to find unique alignment through running four alignment processes simultaneously (Krueger and Andrews, 2011).

As the strand identity of a bisulfite read is a priori unknown, our bisulfite mapping tool Bismark aims to find a unique alignment by running four alignment processes simultaneously.

(iv) Spial can assist in identifying residues that undergo post-translational modifications by running an alignment of sequences that are commonly modified against an alignment of related sequences that are not.

Running automatic alignment 7. Automatic evaluation using test data 8.

When reported, runtime is measured using the shell "time" command, and refers to the total time spent in user space for running an alignment.

These authors advocated running an alignment program under several parameter combinations and to use only those positions that were consistently revealed under all combinations tested.