Sentence examples for run on sequences from inspiring English sources

The neutrality tests for the human 2009 H1N1 pandemic were run on sequences from the pandemic clade (all the remaining sequences were used as outgroup sequences for the MKT), while the test for host-switch events was run on human sequences (swine sequences were used as outgroup sequences for the MKT).

TCR adapted the splice junction analysis algorithm to run on sequence variants written in genome coordinates and helped to draft the manuscript.

For example, global nuclear run on-sequencing (GRO-seq) and precision nuclear run on-sequencing (PRO-seq) with modified nucleotides (Core et al., 2008; Kwak et al., 2013) provide a way to study Pol II profiles associated with nascent transcription.

DNA was then isolated and ran on sequencing gels.

A low number of runs (R) within a sequence indicates that identical elements appear in clusters along the sequence (e.g. three runs on sequence "000011000" vs. seven runs on sequence "010010010").

Orthologous sequence from D. pseudoobscura was selected (using the alignments cited above), and Stubb was run on these sequences in multi-sequence mode.

Core et al devised and implemented a method termed global run-on sequencing, or GRO-seq, to map and quantify transcriptionally engaged RNA polymerases in a genome-wide fashion [28].

These asymmetric patterns correlated with the enhancer activities measured using global run-on sequencing (GRO-seq) data.

Recently, two technologies, the genome-wide nuclear run-on sequencing (GRO-seq) and native elongating transcript sequencing (NET-seq), have been described to study nascent transcripts.

Furthermore, studies using global run-on sequencing demonstrate that genes that have stalled Pol II express low, but significant levels of full-length transcripts (Core et al, 2008).

We have developed an analytical pipeline called groHMM for annotating primary transcripts using global nuclear run-on sequencing (GRO-seq) data.