Sentence examples for rp against from inspiring English sources

Thus, the resistance shown by RP against GMB1 is a complex trait which involves expression of HR, inability of the maggots to survive on the resistant host and association with a recessive resistance gene.

Therefore, in the current study, to understand the resistance mechanism of RP against GMB1 we carried out host transcript and metabolic profiling after GMB1 infestation to investigate the interaction at molecular and biochemical levels.

In Part I of this study (Mueller et al., 2018), we assessed the filtration efficiency (FE) of 17 materials from different forms of RP against volcanic ash and a surrogate, low-toxicity dust, Aloxite.

We discuss the results of this study and highlight the complexity of the incompatible interaction, involving HR, and also generate a model based on our current findings and information available in the literature to provide an integrated understanding of resistance in RP against GMB1.

To calibrate the parameters, we mapped one row pool (rP) against the GenomeZipper sequence dataset with hash size ranging from 10 to 30, and alignment candidate threshold ranging from 20 to 80. Final alignment was done with the following settings: hash size 20; alignment candidate threshold 40; number of mismatches 3 with the GenomeZipper dataset, and 5 with the Ae. tauschii sequence dataset.

All of such ORFs were filtered by running blastp (threshold: e-value < 10-5 and identity > 30%) against Swiss-Prot [ 15] and rps-blast against the conserved domain database (CDD) [ 16].

The modified sequences are searched by rps-BLAST against the "seed" domain sequence and the percentages of coverage are plotted against each amino acid position.

Then, each of these modified query sequences is aligned by rps-BLAST against the parent profile, from which a seed is taken.

Finally, we ran rps-BLAST against these databases and slid the e-value threshold to less statistically significant levels (0.01, 100 or 1010).

Second, we also ran rps-BLAST against a database of PSSMs (n = 24,378) derived from expanding all of the sequences contained in the original 539 PSSMs, using PSI-BLAST (integral lipid-binding database, ILB DB) (see Methods).

To construct a PSSM library for transmembrane proteins, we first ran rps-BLAST against the CDD database, and consider, out of the alignments reported, only those PSSMs that we have previously annotated as transmembrane by keyword (CDD 539).