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Note that any tree node has a single parent, except for the roots of the graph.
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We claim that x ∗ is also a minimal element for the relation ≺ in V ( G ), and hence a root of the graph G. Indeed, let x ∈ V ( G ) be such that x ≺ x ∗.
During the exhaustive reconstruction of the multiple paths leading to the root of the graph, some parent nodes may be visited many times.
We define the level of a term as the number of nodes that exists between this term and the root of the graph (level 0).
The root of the graph is defined as level 0 and the outer nodes without any child nodes connected as leaves.
In the beginning, the primary vertices (white circles) are identified by decomposing the graph at the start-generating vertex (main root of the graph) into a set of subgraphs.
Terms in higher levels (nearer to the root of the graph) are considered to be more generic and have a greater number of genes annotated, while terms in lower levels of the graph are more specific and might have only a few genes annotated.
The torso parts of both actors are connected through a virtual root part of the graph.
Parent refers to the node closer to the root(s) of the graph and child to that closer to the leaf nodes.
This is the origin of the graph.
The nodes at the root of this graph are primarily environmental variables (in the present case external metabolites).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com