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Similar molecules were reported in Arabidopsis and rice to influence cortex-endodermis division regulated by the SHORT-ROOT transcription factor [ 64, 65].
In osmotically stressed root tissue, transcription of CrtBS-related genes is induced in a manner that is consistent with the increased synthesis of carotenoid precursors for ABA biosynthesis.
In osmotically stressed root tissue, transcription of Calvin cycle, methylerythritol 4-phosphate pathway and carotenoid biosynthesis genes is induced and uncoupled from that of chlorophyll biosynthesis genes in a manner that is consistent with the increased synthesis of carotenoid precursors for ABA biosynthesis.
Using WCS417, it was demonstrated that the onset of ISR is regulated by the root-specific transcription factor MYB72 [ 39, 40].
In the roots, the transcription of mitochondrial ATP synthase α- and β-subunit together with ATP/ADP carrier was significantly upregulated at 1 h after stress.
For the moderate DTN, the activated genes function as transporters and signaling networks in the leaves, whereas in the roots, the transcription factors and the carbohydrate metabolism are more important.
Since total RNA content varied up to 14-fold between root segments, reverse transcription was performed on a standardized 100 ng RNA using an iScript cDNA Synthesis Kit (Bio-Rad).
In an analysis of 27 Arabidopsis array data sets, ca. 10% (219/2286) of the genes that consistently respond to nitrate in roots correspond to transcription factors, and of those the third most represented family was the NACs group [ 34].
Patterns of 5meC in LTR transposable elements differed between rice leaves and roots and affected transcription of neighboring genes [ 22] a phenomenon common to the SINE containing FWA promoter of A. thaliana [ 23, 24].
Earlier, analysis of the expression pattern of other genes like cation transport protein (SaCTP), vacuolar ATPase (SaV-ATPase), and plasma membrane protein 3 (SaPMP3) in both leaf and root tissues by reverse transcription PCR (RT-PCR) revealed clear upregulation under salt stress compared to the unstressed control (Baisakh et al. 2008).
At the early stage, this complex also has HAT1 as a member, a histoneacetyltransferase that is a positive regulator of transcription in root morphogenesis.
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